performance improvement of the goertzel algorithm in estimating of protein coding regions using modified antinotch filter and linear predictive coding model

نویسندگان

mahsa saffari farsani

masoud reza aghabozorgi sahhaf

vahid abootalebi

چکیده

the aim of this paper is to improve the performance of the conventional goertzel algorithm in determining the protein codingregions in deoxyribonucleic acid (dna) sequences. first, the symbolic dna sequences are converted into numerical signals usingelectron ion interaction potential method. then by combining the modified anti-notch filter and linear predictive coding model,we proposed an efficient algorithm to achieve the performance improvement in the goertzel algorithm for estimating geneticregions. finally, a thresholding method is applied to precisely identify the exon and intron regions. the proposed algorithm isapplied to several genes, including genes available in databases bg570 and hmr195 and the results are compared to othermethods based on the nucleotide level evaluation criteria. results demonstrate that our proposed method reduces the numberof incorrect nucleotides which are estimated to be in the noncoding region. in addition, the area under the receiver operatingcharacteristic curve has improved by the factor of 1.35 and 1.12 in hmr195 and bg570 datasets respectively, in comparison withthe conventional goertzel algorithm.

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Performance Improvement of the Goertzel Algorithm in Estimating of Protein Coding Regions Using Modified Anti-notch Filter and Linear Predictive Coding Model

The aim of this paper is to improve the performance of the conventional Goertzel algorithm in determining the protein coding regions in deoxyribonucleic acid (DNA) sequences. First, the symbolic DNA sequences are converted into numerical signals using electron ion interaction potential method. Then by combining the modified anti-notch filter and linear predictive coding model, we proposed an ef...

متن کامل

the survey of the virtual higher education in iran and the ways of its development and improvement

این پژوهش با هدف "بررسی وضعیت موجود آموزش عالی مجازی در ایران و راههای توسعه و ارتقای آن " و با روش توصیفی-تحلیلی و پیمایشی صورت پذیرفته است. بررسی اسنادو مدارک موجود در زمینه آموزش مجازی نشان داد تعداد دانشجویان و مقاطع تحصیلی و رشته محل های دوره های الکترونیکی چندان مطلوب نبوده و از نظر کیفی نیز وضعیت شاخص خدمات آموزشی اساتید و وضعیت شبکه اینترنت در محیط آموزش مجازی نامطلوب است.

the role of application of dynamic assessment approach in improvement of iranian efl writing performance at different language proficiency levels

the present study sought to investigate the role of dynamic assessment (da) in improvement of iranian efl writing performance at different language proficiency levels. to this end, after conducting the quick placement test, 60 iranian efl learners were assigned to two groups with different language proficiency levels. in both groups each participant wrote two compositions, one before and one af...

the effect of using critical discourse analytical tools on the improvement of the learners level of critical thinking in reading comprehension

?it is of utmost priority for an experienced teacher to train the mind of the students, and enable them to think critically and correctly. the most important question here is that how to develop such a crucial ability? this study examines a new way to the development of critical thinking utilizing critical discourse analytical tools. to attain this goal, two classes of senior english la...

Transient expression of coding and non-coding regions of PVY confer resistance to virus infection

One of the most efficient mechanisms by which plants protect themselves from invading virusesis the specific RNA-dependent silencing pathway termed post-transcriptional gene silencing(PTGS). In this mechanism, resistance to a virus is engineered through the expression of asegment of the virus genomein transgenic plants. Potato VirusY (PVY) is one of the mostdamaging viruses of potato, infecting...

متن کامل

منابع من

با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید


عنوان ژورنال:
journal of medical signals and sensors

جلد ۶، شماره ۳، صفحات ۱۳۰-۰

میزبانی شده توسط پلتفرم ابری doprax.com

copyright © 2015-2023